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Bio-Systems as Conscious Holograms

Note: Newest contributions are at the top!

Year 2014

How are the visual percepts constructed?

How does visual system analyze the incoming visual information and reconstruct from it a (highly artistic) picture of the external world? I encountered this problem for the first time for about 35 years ago while listening some lecture about what happens in retina. I was working with my thesis as an unemployed in a job with the purpose to make me capable of getting a job in a real world (as a person suffering from a tendency to use my brains to thinking I was (and still am) labelled as a kind of socially handicapped person: in former Soviet Union I would have been labelled as a paranoid). The job itself was a purely formal duty and I was allowed to prepare my thesis rather freely (this would not be possible nowadays). I had also opportunity to listen lectures and this particular lecture series about neuroscience by Kari Kaila has teased me since then.

In the visual cortex there are so called orientation columns. They are sensitive to lines of the visual field in a specific direction. This sounded very strange to me. Why not divide visual field to small cycles or squares and be sensitive to the light in a particular square defining the bit? I learned that there are also simple and complex cells. Simple cells are sensitive to a particular line. Complex cells are sensitive to all lines with same direction.

I was also told that ganglions in retina have receptive fields. There are ganglions with on-center and off-center receptive fields. There is also a saccadic motion which is essential for visual consciousness: if it is prevented, subject persons first begins to see just darkness and eventually the visual consciousness fades away.

How to integrate these pieces to a coherent picture? During morning hours this problem popped up in my mind and I got some ideas and decided to check from Wikipedia what is known. I of course thought that this whole thing has been well-understood for decades and maybe it is! If so, I am making myself a fool: it does not however matter much at this age! I found an article about orientation columns containing a brief mention about a model for how the orientation map is constructed.

So called Moire interference of identical or nearly identical patters rotated with respect to each other by an angle produces a non-localized representation of a definite orientation. By putting the visual representation associated with approximately hexagonal lattices formed by on-centre and off-centre ganglions, one would obtain a representation of orientation somehow. I must be honest: I did not understand the idea at all! There was a reference to an article in Nature: Paik, S., Ringach, D. L. (2011): Retinal origin of orientation maps in the visual cortex. Nature Neuroscience, 14(7), 919-925. I do not have access to this article so that I can continue making naive questions and stupid arguments.

  1. What are the simplest possible visual representations of the external world? Drawings of course. Painters make first a a sketch. We have cartoons. Visualizations are typically 2-D drawings. It would not be surprising if visual system would not obey the same strategy. In finite resolution they consist of pieces of lines forming what looks like continuous structures when the length of basic piece is short enough as anyone who has used drawing programs knows. Maybe brain and retina first build this kind of representation and add colours and other details later.
  2. Could ganglia or possible linear structures formed from them effectively see through slits? They would be specialized to detect the presence of this kind of lines of some minimal length defining the resolution and going through through the centre of retina. When the line is parallel to the slit associated with the detector, the line detector sends nerve pulses to brain.
  3. There is a problem. If the orientation of eye remains fixed, the line detector sees only the lines going through the normal of the retina at its centre and usually sees nothing. Most of visual field would remain unseen. Saccadic motion saves the situation. When the normal of the line detector intersects the line of visual field with a proper orientation, it detects a line. For a given light intensity the input is maximal if the line is longer than the maximal length of line source for which detector is sensitive. The total intensity of incoming light through the slit is enough to build the representation. The output is bit telling whether a piece of line is there or not.
  4. These inputs from slit detectors would be the basic inputs fed to the complex cells forming representations of the lines. In visual cortex the information from the orientation of retina combined with the bits produced by slit detectors during a saccadic motion lasting so long a period that large enough number of orientations of normal are scanned, are combined to a drawing.

    T= .1 seconds is the croon of time for sensory percepts. and is the natural guess for this period of integration. The maximal angular speed of saccadic motion is for humans about 900 degrees/second making 90 degrees per time interval T (see this).

    Certainly there must exist a feedback from brain favoring preferred saccades using already existing information about the distribution of lines so that for targets which are stationary saccades would go along the lines of the already existing picture and detect if changes have occurred.

  5. If the object remains in good approximation at rest during this period, a drawing about the external world is obtained as an outcome. The simplest guess is that orientation column at particular point of visual cortex corresponds to a point in the visual field and if there is line of defined direction going through that point of visual field, simple cell sensitive to that orientation receives input.
  6. Could ganglia themselves see the world through a slit? One can argue that if this were the case, it would have been observed experimentally. I tend to agree. One can of course ask whether saccadic motion necessary for visual consciousness effective blurs the visual field of the ganglion so that it is disk of radius defined by the maximal length of line for which ganglion is sensitive. The simplest and probably the correct assumption is that ganglia indeed detect spots of light or absence of it. Line detectors would correspond to lines formed by ganglia or perhaps similar structures at higher levels of the neural hierarchy.

    Since I love magnetic flux tubes, I cannot resist the temptation to connect the ganglia by flux tubes to form these lines so that one would have a grid lines of ganglia analogous to a the radial lines of a coordinate grid of cylindrical coordinates with origin at the centre of retina. Peripheral regions would correspond to a poorer resolution if this is the case. Maybe macroscopic quantum coherence would enter the stage here and allow to bind the percepts about spots to a percept about line.

Of, course this idea is just a first guess reflecting my deep ignorance about how visual representations are formed, and certainly the details, if not the whole idea, are wrong.

For background see the chapter General theory of qualia .

Do electrons serve as nutrients?

The New Scientist article about bacteria using electrons as nutrients is very interesting reading since the reported phenomenon might serve as a test for the TGD inspired idea about metabolism as a transfer of negentropic entanglement (NE) at fundamental level (see this and this).

  1. NE is always between two systems: nutrient and something, call it X. The proposal inspired by a numerical co-incidence was that X could be what I have called Mother Gaia. X could be also something else, say personal magnetic body. The starting point was the claim that the anomalously high mass of electronic Cooper pair in rotating supercounductor (slightly larger than the sum of electron masses!) could be due to a gravimagnetic effects which is however too strong by a factor 1028. This claim was made by a respected group of scientists. Since the effect is proportional to the gravimagnetic Thomson field proportional to the square of Planck constant, the obvious TGD inspired explanation would be heff≈ 1014 (see this and this).
  2. Gravitational Planck constant hgr= GMm/v0, v0 a typical velocity in system consisting of masses M>>m and m was introduced originally by Nottale. I proposed that it is genuine Planck constant assignable to flux tubes mediating gravitational interaction between M and m. In the recent case v0 could be the rotating velocity of Earth around its axis at the surface of Earth.
  3. For electron, ions, molecules, .. the value of hgr would of the order of 1014 required by the gravimagnetic anomaly and is also of the same order as heff=n× h needed by the hypothesis that cyclotron energies for these particles are universal (no mass dependence) and in the visible and UV range assigned to biophotons. Biophotons would result from dark photons via phase transition. This leads to the hypothesis heff=hgr unifying the two proposals for the hierarchy of Planck constants at least in microscopic scales.

    Thanks to Equivalence Principle implying that gravitational Compton length does not depend on particle's mass, Nottale's findings can be understood if hgr hypothesis holds true only in microscopic scales. This would mean that gravitation in planetary system is mediated by flux tubes attached to particles rather than entire planet, say. One non-trivial implication is that graviton radiation is dark so that single graviton carries much larger energy than in GRT based theory. The decay of dark gravitons to ordinary gravitons would produce bunches of ordinary gravitons rather than continuous stream: maybe this could serve as an experimental signature. Gravitational radiation from pulsars is just at the verge of detection if it is what GRT predicts. TGD would predict pulsed character and this might prevent its identification if based on GRT based belief system.

  4. In the recent case the model would say that the electrons serving as nutrients have this kind of negentropic entanglement with Mother Gaia. hgr=heff would be of order 108. Also in nutrients electrons would be the negentropically entangled entities. If the model is correct, nutrient electrons would be dark and could also form Cooper pairs. This might serve as the eventual test.

Electrons are certainly fundamental for living matter in TGD Universe.

  1. Cell membrane is assumed to be high Tc electronic superconductor (see this). Members of Cooper pairs are at flux tubes carrying opposite magnetic fields so that the magnetic interaction energy produces very large binding energy for the large values of heff involved: of the order of electron volts! This is also the TGD based general mechanism of high Tc superconductivity: it is now accepted that anti ferromagnetism is crucial and flux tubes carrying fluxes at opposite directions is indeed very antiferromagnetic kind of thing.
  2. Josephson energy is proportional to membrane voltage (EJ= 2eV) is just above the thermal energy at room temperature meaning minimal metabolic costs.
  3. Electron's secondary p-adic time scale is .1 seconds, the fundamental biorhythm which corresponds to 10 Hz alpha resonance.
For background see the chapter Macroscopic quantum coherence and quantum metabolism as different sides of the same coin II.

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